AI Protein Structure Specialist.
Portland.
$222,000
median salary, 1% above the national average
$173,000 to $288,000. Last updated August 2026.
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Data points to own the conversation.
If you are evaluating an AI Protein Structure Specialist offer in Portland, ME, here is the reality: $173,000 to $288,000, with $222,000 as the midpoint. 1% above the national average. Model complexity, data pipeline scale, and infrastructure cost optimization are the primary drivers. Do not accept the first number. These figures are Orbyt estimates, computed rather than measured, and must not be cited as Bureau of Labor Statistics figures; the published BLS wage for the occupation this role maps to is shown separately on this page.
Salary range.
Where do you fall?
Orbyt estimate for AI Protein Structure Specialist in Portland, modelled from national occupation wages adjusted for local cost of living. The published government benchmark for this occupation is below.
Government benchmark for this occupation
The US Bureau of Labor Statistics reports a median annual wage of $84,490 for Biochemists and Biophysicists (SOC 19-1021) in the Portland-South Portland, ME metropolitan area, based on 380 employed workers (May 2025 release).
10th percentile
$66,570
25th percentile
$81,310
Median
$84,490
75th percentile
$113,210
90th percentile
$132,830
Workers surveyed
380
Why this differs from the estimate above. The Orbyt estimate of $222,000 is 163% higher than this published figure. That is usually not an error in either number: BLS reports by occupation code, and Biochemists and Biophysicists covers a different population than the AI Protein Structure Specialist title as it is typically advertised. Both are shown, unreconciled, so you can judge which one describes the job you mean.
BLS publishes wages by occupation code, not by job title, so this figure covers every role mapped to Biochemists and Biophysicists (SOC 19-1021) rather than AI Protein Structure Specialist specifically. The Portlandrange at the top of this page is Orbyt’s role-level estimate, which is a different thing and is labelled as such.
View the BLS source for SOC 19-1021Salary by experience.
The gap between entry and lead level is typically $200,000. Where you land depends on years of experience and what you bring to the table.
Entry (0-2 yrs)
$144,000
to $178,000
Mid (3-5 yrs)
$189,000
to $233,000
Senior (6-9 yrs)
$244,000
to $289,000
Lead (10+ yrs)
$278,000
to $344,000
Total compensation.
Base salary is not the full picture. Equity, bonus, and signing can add $102,000 to the total package.
Base
$222,000
Equity
$62,000
Bonus
$27,000
Signing
$13,000
Estimated total: $324,000
How Portland compares.
Portland, ME
$222,000
Cost of living: 5% above average
National Average
$220,000
Portland is $2,000 above
AI Protein Structure Specialist salary by city.
Salary by role in Portland.
What you should know.
Here is what the AI Protein Structure Specialist market actually looks like in Portland. Portland, Maine is a small but growing tech and creative economy hub. The city attracts remote workers and small companies seeking quality of life on the New England coast. Healthcare, marine industries, and a craft food and beverage sector round out the local economy. Model complexity, data pipeline scale, and infrastructure cost optimization are the primary drivers. AI Protein Structure Specialists with experience across the full ML lifecycle, from research prototyping to production serving, earn more than those focused on a single phase. Domain expertise in high-stakes verticals like healthcare, finance, or autonomous systems adds measurable premiums.
Entry-level AI Protein Structure Specialists start near $172,000. Mid-career professionals with three to five years of experience reach $220,000 to $286,000. Senior-level roles command $282,000 to $341,000. Management transitions to director-level positions offer $363,000 and above. In Portland, cost of living sits near the national average, so the numbers you see are roughly what you keep.
Base salary is not the full picture. Equity at top-tier companies adds 30% to 60% above base salary. Annual bonuses of 15% to 25% are standard. Signing bonuses of $25,000 to $75,000 are common when changing roles. Refresher equity grants vest annually. Relocation packages and executive benefits like financial planning are typical. And on the tax side: maine's top income tax rate is 7.15%. Portland has no city income tax. The state rate is above average but offset by quality of life and access to rural New England. When someone quotes you $222,000, ask what the total package looks like. The gap between base and total comp is where real money hides.
On negotiation: Negotiate remote work flexibility. Portland employers know they compete with Boston and New York for talent and may offer location flexibility to attract top candidates. The range for AI Protein Structure Specialists in Portland runs from $173,000 to $288,000. That is not a narrow window. Where you land inside it depends almost entirely on whether you negotiate and how well you prepare.
Sources: BLS OES, H-1B LCA (DOL). COL: BEA Regional Price Parities (2025). Data verified by Justin Bartak, Founder & Chief AI Officer. Last verified July 1, 2026. Full methodology
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Common questions.
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